TFEA.ChIP: a tool kit for transcription factor enrichment1 years ago
Introduction | Analysis Example | Selecting a preferred TF–target gene database | Overrepresentation analysis | Identification of DE genes | Translate the gene IDs to Entrez Gene IDs | Overrepresentation test | Plot results | Gene Set Enrichment Analysis | Generate a sorted list of ENTREZ IDs | Select the ChIP-Seq datasets to analyze | Run the GSEA analysis | Plotting the results | Building a TF-gene binding database | Filter peaks from source and store them as a GRanges object | Assign TFBS peaks from ChIP dataset to specific genes | Substitute the default database by a custom generated table.